The syndrome is typically caused by gain-of-function (activating) mutations in multiple genes in the Ras/mitogen-activated protein kinase (MAPK) signal transduction pathway. Some of the genes implicated include:
PTPN11: mutations of this gene are present in 50% to 60% of patients with NS.[11]Tartaglia M, Mehler EL, Goldberg R, et al. Mutations in PTPN11, encoding the protein tyrosine phosphatase SHP-2, cause Noonan syndrome. Nat Genet. 2001 Dec;29(4):465-8.
http://www.ncbi.nlm.nih.gov/pubmed/11704759?tool=bestpractice.com
[12]Tartaglia M, Kalidas K, Shaw A, et al. PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity. Am J Hum Genet. 2002 Jun;70(6):1555-63.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC379142
http://www.ncbi.nlm.nih.gov/pubmed/11992261?tool=bestpractice.com
The mutations correlate with pulmonary stenosis, short stature, easy bruising with factor VIII deficiency, pectus deformity, and typical face.[11]Tartaglia M, Mehler EL, Goldberg R, et al. Mutations in PTPN11, encoding the protein tyrosine phosphatase SHP-2, cause Noonan syndrome. Nat Genet. 2001 Dec;29(4):465-8.
http://www.ncbi.nlm.nih.gov/pubmed/11704759?tool=bestpractice.com
[12]Tartaglia M, Kalidas K, Shaw A, et al. PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity. Am J Hum Genet. 2002 Jun;70(6):1555-63.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC379142
http://www.ncbi.nlm.nih.gov/pubmed/11992261?tool=bestpractice.com
[14]Yoshida R, Hasegawa T, Hasegawa Y, et al. Protein-tyrosine phosphatase, non-receptor type 11 mutation analysis and clinical assessment in 45 patients with Noonan syndrome. J Clin Endocrinol Metab. 2004 Jul;89(7):3359-64.
https://academic.oup.com/jcem/article-lookup/doi/10.1210/jc.2003-032091
http://www.ncbi.nlm.nih.gov/pubmed/15240615?tool=bestpractice.com
[15]Limal JM, Parfait B, Cabrol S, et al. Noonan syndrome: relationships between genotype, growth, and growth factors. J Clin Endocrinol Metab. 2006 Jan;91(1):300-6.
https://academic.oup.com/jcem/article-lookup/doi/10.1210/jc.2005-0983
http://www.ncbi.nlm.nih.gov/pubmed/16263833?tool=bestpractice.com
One mutation (73Ile) is found in almost half of children with NS and juvenile myelomonocytic leukemia.[2]Kratz CP, Niemeyer CM, Castleberry RP, et al. The mutational spectrum of PTPN11 in juvenile myelomonocytic leukemia and Noonan syndrome/myeloproliferative disease. Blood. 2005 Sep 15;106(6):2183-5.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1895140
http://www.ncbi.nlm.nih.gov/pubmed/15928039?tool=bestpractice.com
SOS1: second major gene for NS. Mutations of this gene are present in 10% to 15% of patients with NS.[3]Roberts AE, Araki T, Swanson KD, et al. Germline gain-of-function mutations in SOS1 cause Noonan syndrome. Nat Genet. 2007 Jan;39(1):70-4.
http://www.ncbi.nlm.nih.gov/pubmed/17143285?tool=bestpractice.com
[4]Tartaglia M, Pennacchio LA, Zhao C, et al. Gain-of-function SOS1 mutations cause a distinctive form of Noonan syndrome. Nat Genet. 2007 Jan;39(1):75-9.
http://www.ncbi.nlm.nih.gov/pubmed/17143282?tool=bestpractice.com
Mutations in the gene correlate with more ectodermal features and a more normal growth and cognitive profile.
RAF1: mutations of this gene are present in approximately 5% of patients with NS.[5]Pandit B, Sarkozy A, Pennacchio LA, et al. Gain-of-function RAF1 mutations cause Noonan and LEOPARD syndromes with hypertrophic cardiomyopathy. Nat Genet. 2007 Aug;39(8):1007-12.
http://www.ncbi.nlm.nih.gov/pubmed/17603483?tool=bestpractice.com
[6]Razzaque MA, Nishizawa T, Komoike Y, et al. Germline gain-of-function mutations in RAF1 cause Noonan syndrome. Nat Genet. 2007 Aug;39(8):1013-7.
http://www.ncbi.nlm.nih.gov/pubmed/17603482?tool=bestpractice.com
They are strongly associated with hypertrophic cardiomyopathy.
KRAS: these gene mutations are rare and found in approximately 1% of cases.[7]Schubbert S, Zenker M, Rowe SL, et al. Germline KRAS mutations cause Noonan syndrome. Nat Genet. 2006 Mar;38(3):331-6.
http://www.ncbi.nlm.nih.gov/pubmed/16474405?tool=bestpractice.com
[16]Carta C, Pantaleoni F, Bocchinfuso G, et al. Germline missense mutations affecting KRAS isoform B are associated with a severe Noonan syndrome phenotype. Am J Hum Genet. 2006 Jul;79(1):129-35.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1474118
http://www.ncbi.nlm.nih.gov/pubmed/16773572?tool=bestpractice.com
They are linked with a greater likelihood and severity of cognitive impairment.[7]Schubbert S, Zenker M, Rowe SL, et al. Germline KRAS mutations cause Noonan syndrome. Nat Genet. 2006 Mar;38(3):331-6.
http://www.ncbi.nlm.nih.gov/pubmed/16474405?tool=bestpractice.com
[16]Carta C, Pantaleoni F, Bocchinfuso G, et al. Germline missense mutations affecting KRAS isoform B are associated with a severe Noonan syndrome phenotype. Am J Hum Genet. 2006 Jul;79(1):129-35.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1474118
http://www.ncbi.nlm.nih.gov/pubmed/16773572?tool=bestpractice.com
[17]Zenker M, Lehmann K, Schulz AL, et al. Expansion of the genotypic and phenotypic spectrum in patients with KRAS germline mutations. J Med Genet. 2007 Feb;44(2):131-5.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2598066
http://www.ncbi.nlm.nih.gov/pubmed/17056636?tool=bestpractice.com
NRAS: sequence analysis of this gene has revealed a mutation in just a small group of individuals.[8]Cirstea IC, Kutsche K, Dvorsky R, et al. A restricted spectrum of NRAS mutations causes Noonan syndrome. Nat Genet. 2010 Jan;42(1):27-9.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3118669
http://www.ncbi.nlm.nih.gov/pubmed/19966803?tool=bestpractice.com
BRAF and MAP2K1: mutations in these genes are typically found in individuals with cardio-facio-cutaneous syndrome. However, about 2% of individuals described as having NS have been reported to have a mutation in 1 of these 2 genes.[9]Nyström AM, Ekvall S, Berglund E, et al. Noonan and cardio-facio-cutaneous syndromes: two clinically and genetically overlapping disorders. J Med Genet. 2008 Aug;45(8):500-6.
http://www.ncbi.nlm.nih.gov/pubmed/18456719?tool=bestpractice.com
[10]Sarkozy A, Carta C, Moretti S, et al. Germline BRAF mutations in Noonan, LEOPARD, and cardiofaciocutaneous syndromes: molecular diversity and associated phenotypic spectrum. Hum Mutat. 2009 Apr;30(4):695-702.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4028130
http://www.ncbi.nlm.nih.gov/pubmed/19206169?tool=bestpractice.com
SHOC2: mutations of SHOC2 were identified in individuals with a Noonan phenotype with loose anagen hair.[18]Cordeddu V, Di Schiavi E, Pennacchio LA, et al. Mutation of SHOC2 promotes aberrant protein N-myristoylation and causes Noonan-like syndrome with loose anagen hair. Nat Genet. 2009 Sep;41(9):1022-6.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2765465
http://www.ncbi.nlm.nih.gov/pubmed/19684605?tool=bestpractice.com
CBL: heterozygous mutations in CBL were identified in a small number of individuals with a Noonan phenotype with variable expressivity.[19]Martinelli S, De Luca A, Stellacci E, et al. Heterozygous germline mutations in the CBL tumor-suppressor gene cause a Noonan syndrome-like phenotype. Am J Hum Genet. 2010 Aug 13;87(2):250-7.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2917705
http://www.ncbi.nlm.nih.gov/pubmed/20619386?tool=bestpractice.com
RIT1: gain-of-function mutations in RIT1 have been reported in 9% of individuals with Noonan syndrome that did not have detectable mutations in the above listed genes.[20]Aoki Y, Niihori T, Banjo T, et al. Gain-of-function mutations in RIT1 cause Noonan syndrome, a RAS/MAPK pathway syndrome. Am J Hum Genet. 2013 Jul 11;93(1):173-80.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3710767
http://www.ncbi.nlm.nih.gov/pubmed/23791108?tool=bestpractice.com
RASA2: loss-of-function mutation has been reported in small numbers of individuals with Noonan syndrome in one study.[21]Chen PC, Yin J, Yu HW, et al. Next-generation sequencing identifies rare variants associated with Noonan syndrome. Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11473-8.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4128129
http://www.ncbi.nlm.nih.gov/pubmed/25049390?tool=bestpractice.com
SOS2 and LZTR1: results from one cohort study suggest that approximately 3% of all patients with Noonan syndrome have mutations in these two genes.[22]Yamamoto GL, Aguena M, Gos M, et al. Rare variants in SOS2 and LZTR1 are associated with Noonan syndrome. J Med Genet. 2015 Jun;52(6):413-21.
http://jmg.bmj.com/content/52/6/413.long
http://www.ncbi.nlm.nih.gov/pubmed/25795793?tool=bestpractice.com
PPP1CB: missense mutations observed in four patients in one study show clinical overlap with individuals with SHOC2 mutations.[23]Gripp KW, Aldinger KA, Bennett JT, et al. A novel rasopathy caused by recurrent de novo missense mutations in PPP1CB closely resembles Noonan syndrome with loose anagen hair. Am J Med Genet A. 2016 Sep;170(9):2237-47.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5134331
http://www.ncbi.nlm.nih.gov/pubmed/27264673?tool=bestpractice.com