This article discusses the ecological environment moral education of college students based on deep learning. This article first points out the concept of deep learning and the relationship between ecological civilization and college students' ecological environment morality. Then, it expounds the latest concepts and achievements of ecological civilization in China, analyzes the deficiencies and reasons of current college students' ecological moral education, and clearly points out the significance of strengthening college students' ecological moral education based on in-depth learning. This article focuses on the main contents and principles of setting suggestions of the ecological environment moral education for college students. Finally, it gives the countermeasures for the ecological environment moral education of college students based on deep learning. It focuses on the theoretical realization of college students' ecological environmental moral education from the perspective of deep learning, aiming at promoting the construction of ecological civilization.