Much of the scholarship on employment and career pathways of PhD graduates has examined the issues, including pre-doctoral experiences, quality of doctoral education, networking and career choices across different sectors; however, contextual environmental factors have been generally overlooked. This study aims to explore the academic career choices and pathways of PhD graduates currently employed in universities in the Greater Bay Area (GBA) in China. The primary data sources include semi-structured interviews with a group of 28 PhD graduates from 14 universities in Guangdong province and Hong Kong, government talent policy documents, and university documents regarding recruitment and tenure. The findings of this study revealed five strategic logics that the PhD graduates deployed in the dynamic decision-making process for academic career choices and pathways in the GBA: (1) logic of academic alignment (matching degrees between academic competitiveness and academic job market, alignment in research/teaching agenda, alignment with future professional aspiration); (2) logic of financial concerns; (3) logic of academic network; (4) logic of risk mitigation; (5) logic of institutional culture. Implications for universities and policymakers on academic career support and talent management in the GBA are also provided.