As a representative catabolic reaction that widely exists in nature, anaerobic digestion (AD) exhibits great value regarding the global carbon cycle, renewable energy development, and environmental protection. Such an important biochemical reaction was ignored before and should be introduced into the teaching and textbooks of undergraduate biochemistry courses. However, students may face obstructions when learning AD theories since the metabolic pathways in AD are very complex. To solve these problems, an instructive metabolic minimap of the AD reaction was designed, including its reaction stages, reaction pathways, substrates, and enzymes. Furthermore, the interrelationships between aerobic catabolism (AEC) and anaerobic catabolism (ANC) were also summarized by combining the catabolic pathways of typical biological macromolecules. In this paper, AD theories were first replenished into undergraduate biochemistry courses by metabolic minimap, which not only provided valuable supports for the practical teaching of AD in undergraduate biochemistry courses, but also acted as an important reference for students in biology-related majors and biochemistry teachers.