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ERIC Number: EJ1349383
Record Type: Journal
Publication Date: 2022
Pages: 6
Abstractor: As Provided
ISBN: N/A
ISSN: ISSN-1470-8175
EISSN: EISSN-1539-3429
Visualizing Protein Big Data Using Python and Jupyter Notebooks
Weiss, Charles J.
Biochemistry and Molecular Biology Education, v50 n5 p431-436 Sep-Oct 2022
This article reports a workshop from the 2021 IUBMB/ASBMB Teaching Science with Big Data conference held virtually in June 2021 where participants learned to explore and visualize large quantities of protein PBD data using Jupyter notebooks and the Python programming language. This activity instructs participants using Jupyter notebooks, Python functions, loading data with Python, and visualize data using the matplotlib and seaborn Python plotting libraries. It also allows participants to explore large quantities of data to discover trends such amino acid abundance, dihedral angles patterns, and secondary protein structure trends. All files used in this activity, including data files, Jupyter notebooks, and completed Jupyter notebooks, are freely available at https://github.com/weisscharlesj/BiopythonRamachandran under the CC BY-NC-SA 4.0 Creative Commons license.
Wiley. Available from: John Wiley & Sons, Inc. 111 River Street, Hoboken, NJ 07030. Tel: 800-835-6770; e-mail: cs-journals@wiley.com; Web site: https://bibliotheek.ehb.be:2191/en-us
Publication Type: Journal Articles; Reports - Descriptive
Education Level: N/A
Audience: N/A
Language: English
Sponsor: N/A
Authoring Institution: N/A
Grant or Contract Numbers: N/A