ERIC Number: EJ1014563
Record Type: Journal
Publication Date: 2013-May
Pages: 5
Abstractor: As Provided
ISBN: N/A
ISSN: ISSN-0021-9584
EISSN: N/A
Available Date: N/A
Computational Modeling of the Optical Rotation of Amino Acids: An "in Silico" Experiment for Physical Chemistry
Simpson, Scott; Autschbach, Jochen; Zurek, Eva
Journal of Chemical Education, v90 n5 p656-660 May 2013
A computational experiment that investigates the optical activity of the amino acid valine has been developed for an upper-level undergraduate physical chemistry laboratory course. Hybrid density functional theory calculations were carried out for valine to confirm the rule that adding a strong acid to a solution of an amino acid in the l configuration renders the optical rotation more positive. Correspondingly, if the optical rotation becomes more negative, the amino acid is of the "D" configuration. The students employed the open-source molecular editor Avogadro to build the molecules, conduct conformer searches, and calculate the energies of the conformers with a molecular mechanics force field. Subsequent geometry optimizations and optical rotation calculations were performed with a quantum chemistry program, using the WebMO graphical interface. The role of the solvent in stabilizing the zwitterionic form of an amino acid was investigated. (Contains 2 figures and 1 table.)
Descriptors: Science Instruction, Chemistry, College Science, Undergraduate Study, Computation, Motion, Optics, Molecular Structure, Geometry, Computer Assisted Instruction, Biochemistry, Science Laboratories, Educational Technology, Laboratory Experiments
Division of Chemical Education, Inc and ACS Publications Division of the American Chemical Society. 1155 Sixteenth Street NW, Washington, DC 20036. Tel: 800-227-5558; Tel: 202-872-4600; e-mail: eic@jce.acs.org; Web site: http://pubs.acs.org/jchemeduc
Publication Type: Journal Articles; Reports - Descriptive
Education Level: Higher Education; Postsecondary Education
Audience: N/A
Language: English
Sponsor: N/A
Authoring Institution: N/A
Grant or Contract Numbers: N/A
Author Affiliations: N/A