Having a deeper understanding of molecules in their structural forms allows students to grasp biochemical and general chemical concepts in a more profound manner. Through the use of visualization software, we have shown that students gain confidence and insight into the chemical workings of molecular structure and can then utilize this knowledge in its applications to societal health-related issues. In this research, we introduced students in a biochemistry class to visual molecular dynamics software and had them complete several activities. The final project consisted of three parts, including data gathering, team presentations and pitches with peer review, and a final persuasive report Each of these advanced student mastery of the molecular biochemical details while mastering a skill-set that allowed them to think creatively and apply this knowledge to a pertinent world-problem. Overwhelmingly, we found that student interest in the subject, as well as performance and confidence increased across the use of molecular visualization in the classroom. Additionally, upon close inspection, we found that such student-centered work benefitted historically marginalized students. Overall, students who can connect with course materials and embrace real-world, hands-on applications are increasing societal scientific literacy which can trickle down across decision-making and public health.