This paper presents the methodology for strategic decision making in higher education (HE). The methodology is structured as a cycle of strategic decision making with four phases, and it is focused on institutional and national perspective, i.e. on decision making that takes place at institutions of HE and relevant national authorities, in case HEIs are public. Case study of e-learning implementation in HE is presented. E-learning refers to technology enhanced learning, blended learning, open and distance learning as well as massive online courses (MOOCs) delivered by HEIs. [For the full proceedings, see ED562095.]