We offer an introduction to the five papers that make up this special section. These papers deal with a range of the methodological challenges that face researchers analyzing fMRI data--the spatial, multilevel, and longitudinal nature of the data, the sources of noise, and so on. The papers all provide analyses of data collected by a multi-site consortium, the Function Biomedical Informatics Research Network. Due to the sheer volume of data, univariate procedures are often applied, which leads to a multiple comparisons problem (since the data are necessarily multivariate). The papers in this section include interesting applications, such as a state-space model applied to these data, and conclude with a reflection on basic measurement problems in fMRI. All in all, they provide a good overview of the challenges that fMRI data present to the standard psychometric toolbox, but also to the opportunities they offer for new psychometric modeling.