The modality of learning in the Philippines became highly revolutionized during the start of the global pandemic that hit the entire economy and education sector, which has negative implications. Universities and Basic Education designed an alternative mode of learning that fits the regulations of the Inter-Agency Task Force on COVID-19 (IATF). The researchers used a quantitative research design in collecting and analyzing the numerical data. Because it is the methodology that researchers use to test theories about people's attitudes and behaviors based on numerical and statistical evidence. Students' preferences in terms of the hybrid learning approach are with the in-person approach because they can easily understand and catch up with the subject being taught. The majority of students are still determined to have limited in-person or face-to-face classroom discussion. The most common challenges experienced by the students, being ranked accordingly, are the lack of appropriate devices and the interaction with teachers and students. According to Kohnke & Moorhouse (2021), the utilization of various features of the video-conferencing software and other digital tools was seen as essential to the effectiveness of the HyFlex Learning Modality. That is why it is important for colleges to strictly monitor and strengthen the conduct of hybrid learning and follow the compliance set by the National Government Agencies.