Inquiry-based learning (IBL) provides students with an opportunity to take ownership of their learning while developing important higher-order skills necessary for designing innovative solutions to complex modern health problems. In our undergraduate health sciences program, critical thinking, creativity, research skills and innovative thinking are core program learning outcomes, and thus IBL is an important pillar of our curriculum. We have taken a staged approach, integrating IBL into each year of a four-year undergraduate degree program that scaffolds structure and independence to suit undergraduate student needs from the first to third years; this culminates in an independent, student-driven honours thesis in the fourth year. In this paper, we share practical IBL strategies that pair with student needs throughout the four-year continuum and highlight strategies to address challenges at each stage of learning.